- Payroll,
- Employee Administration
What is Payroll - Know Calculation, Step by Step Process
16 May, 2025 |

Akanksha Shekhar
With over 9 years immersed in the world of content marketing for SaaS, Cloud, HRMS and multiple other industries, Akanksha Shekhar currently leads the content initiatives as Manager of Content Marketing. Her expertise lies in the art of bringing words to life, creating engaging narratives and technically sound pieces that are both catchy and deeply informative.
Payroll is one of the most important functions in any organization. It covers everything from calculating employee salaries, withholding taxes, to ensuring timely payments. Whether you’re managing a small team or running a large company, accurate payroll calculations are essential to maintain compliance and keep employees satisfied. Many businesses today rely on payroll management services, a reliable business payroll system, or advanced payroll software to handle this complex task smoothly.
In this blog, we’ll explain what payroll really means and take a closer look at how payroll calculations are executed. We’ll also explore the tools and methods businesses use, including payroll management services and Payroll Software, to simplify the process. Whether you're considering upgrading your business payroll system or just want a better understanding of payroll basics, this guide will help you get started.
Initial steps in calculating payroll
Getting payroll calculations right starts with setting up some important basics. These initial considerations lay the foundation for error-free payroll processing and help businesses stay compliant with laws. Whether you handle payroll in-house using a business payroll system or through professional payroll management services, attention to these details is crucial.
Pay Periods
The first step in payroll processing is to define your pay periods. Will your employees be paid weekly, bi-weekly, semi-monthly, or monthly? Choosing the right pay cycle affects not just cash flow but also tax reporting and compliance. For example, a weekly pay period means you’ll be running payroll calculations more frequently. Modern Payroll Software allows businesses to set pay periods based on their needs and automates the schedule, reducing the risk of missed or delayed payments.
Salary Structure
Your company’s salary structure is another key factor. It includes basic salary, house rent allowance (HRA), special allowances, bonuses, overtime pay, and statutory deductions like provident fund (PF) and professional tax. A well-defined salary structure simplifies payroll calculations and helps ensure that employees clearly understand their earnings and deductions. Many businesses rely on payroll management services or advanced Payroll Software to create flexible salary structures that can be customized for different roles and levels.
Employee Type
Payroll also varies depending on the type of employee. Full-time staff, part-time workers, freelancers, and contractual employees all have different pay rules and benefits. For example, statutory benefits like ESI and PF usually apply to full-time employees but not to independent contractors. Categorizing employees correctly in your business payroll system is essential for accurate payroll calculations and compliance with labor laws.
Statutory Requirements and PAN Number
In India (and many other countries), statutory compliance is a major part of payroll. This includes deducting taxes at source (TDS), PF, ESI, and professional tax as per legal guidelines. To ensure compliance, it’s mandatory to collect PAN numbers from employees for tax filing. Ignoring these requirements can lead to penalties. Modern Payroll Software and payroll management services come with built-in compliance features that help businesses stay updated with the latest legal changes.
Salary Calculation Modes
Salary can be calculated in different ways, monthly, daily, or hourly, depending on your company policy and the employee’s role. For instance, sales staff or part-time workers might be paid on an hourly basis, while full-time employees receive a fixed monthly salary. Configuring the correct calculation mode in your business payroll system ensures accurate earnings and deduction amounts every cycle. Good Payroll Software supports multiple modes, making payroll flexible and adaptable.
Employee Bank Information
Finally, correct bank information is essential for salary disbursement. Incorrect account numbers or missing details can delay payments and cause employee dissatisfaction. As part of the initial setup, businesses must collect and verify bank account details and store them securely in their payroll system. Some payroll management services even integrate directly with banks, enabling smooth and automated salary transfers after payroll calculations are finalized.
Salary Calculation Preparation
Before starting the actual payroll calculations, businesses must prepare by gathering employee-specific data for the pay period. This preparation phase is crucial because it ensures that every payout is accurate and reflects real-time changes. Whether you’re using a manual method, a business payroll system, or outsourced payroll management services, this step cannot be skipped. Many organizations today simplify this phase using automated Payroll Software, which helps reduce errors and speeds up processing.
Identification of Number of Days Worked or Leave Without Pay (LWP)
The first step in salary preparation is identifying the exact number of days an employee has worked during the pay period. Any unpaid leaves, also known as Leave Without Pay (LWP), must be deducted. Most Payroll Software today integrates with attendance systems, making it easy to fetch attendance records and automate this part of payroll calculations.
Special Payouts
Special payouts include bonuses, incentives, overtime, or festival advances given during a specific month. These payouts are usually variable and must be added separately to regular salary. Accurate inclusion of special payouts ensures employee satisfaction and avoids payment disputes. Advanced business payroll systems make it easy to process such variable payments within regular payroll runs.
Claims
Employees often submit claims for travel, mobile reimbursements, or other work-related expenses. Before processing payroll, these claims need to be verified and approved so they can be included in the month’s salary. Many businesses rely on payroll management services or integrated Payroll Software to handle claims, ensuring they are processed efficiently along with payroll calculations.
Expense Reimbursement
Separate from claims, expense reimbursements refer to amounts paid back to employees for expenses incurred on behalf of the company. These may include client meeting expenses or project-related costs. Capturing this data accurately during salary calculation preparation ensures that employees are reimbursed on time, and financial records stay clean.
Lifecycle Events
Employee lifecycle events such as promotions, transfers, or role changes directly impact salary. For example, a promotion may come with a salary hike that needs to reflect in the current payroll calculations. A good business payroll system will automatically update these changes if the HR data is properly maintained, ensuring payroll stays accurate.
New Joinees
For new employees who join mid-month, salary is calculated on a pro-rata basis. This requires precise tracking of their joining date and applying the right calculation mode. Automated Payroll Software makes it easy to handle such cases by automatically computing the number of payable days.
Exits
When an employee exits the company, final settlement is required. This includes payment for earned leaves, pending claims, and deductions for any advances taken. Exit processing is one of the most sensitive parts of payroll calculations. Using payroll management services or a reliable business payroll system helps in ensuring compliance and avoiding errors during full-and-final settlement.
Investment Declaration
Employees often declare their investments to claim tax benefits. These declarations directly affect tax deductions in their salary. As part of payroll preparation, businesses must verify and consider these declarations so that TDS (Tax Deducted at Source) is calculated correctly. Modern Payroll Software includes tax modules that make this process seamless and accurate.
Salary calculation process
Once salary preparation is done, the actual payroll calculations process begins. This involves multiple steps to ensure that employees are paid accurately and on time, while staying compliant with laws. Whether you use payroll management services, a business payroll system, or modern Payroll Software, the process generally follows these key stages:
- Arrears: Any pending payments like salary revisions or missed payouts from previous months are calculated and added during this stage.
- Calculations and Deductions: The core of payroll, gross salary is calculated, and all applicable deductions like taxes, PF, ESI, and professional tax are applied. Good Payroll Software automates these deductions accurately based on statutory rules.
- Finalization and Validation: After all payroll calculations, payroll data is reviewed and validated to ensure there are no errors. Many businesses rely on payroll management services or in-built checks in their business payroll system for this step.
- Bank Transfer and Payslip Sharing: Once finalized, net salaries are transferred to employee bank accounts. Payslips, showing detailed earnings and deductions, are shared through email or employee portals.
- Statutory Reports Filing: Finally, statutory reports related to tax deductions, PF, ESI, and other filings are prepared and submitted to government bodies. This keeps your business compliant and avoids legal penalties.
Read: Payroll Processing: A Complete Guide with Steps, Types, and Challenges
Advantages of Payroll Software
Investing in Payroll Software offers several benefits for businesses of all sizes. Whether you're managing payroll in-house or looking to upgrade your current business payroll system, using the right tool can simplify complex tasks and bring long-term efficiency. Beyond just handling payroll calculations, payroll tools help organizations stay compliant, reduce costs, and improve overall payroll accuracy. Here are some key advantages of using Payroll Software:
- Using Payroll Software reduces costs by minimizing manual work and avoiding expensive payroll errors.
- It enhances compliance by keeping payroll aligned with the latest tax laws and statutory requirements.
- Improved employee satisfaction is achieved through accurate payments and easy access to payslips and tax documents.
- Payroll Software ensures error-free payroll calculations, reducing the risk of salary disputes and corrections.
- It enables timely payments by automating bank transfers and salary processing schedules.
- By saving time on repetitive tasks, Payroll Software allows HR teams to focus on more strategic work.
Read Here: A Complete Guide to Payroll Management
Data Security and Easy Data Insights
Modern Payroll Software ensures that sensitive employee data, such as salary details, tax information, and bank account numbers, is securely stored and protected from unauthorized access. Along with strong data security, it also offers easy data insights by generating clear reports on payroll calculations, tax filings, and overall payroll costs. These insights help businesses make informed decisions and maintain better control over their business payroll system.
Efficient payroll calculations are crucial for every business. By using the right Payroll Software, you can make payroll easier, ensure employees are paid on time, and stay compliant with tax laws. From setting pay periods to handling deductions, every detail matters for smooth payroll processing.
HONO offers a simple and powerful HR platform that helps you manage payroll with ease. With features like automatic updates for compliance and easy reporting, HONO makes payroll tasks faster and more accurate.
Want to see how it works? Schedule a demo with HONO today and see how it can help your business!
Frequently Asked Questions
Payroll calculations are crucial for ensuring that employees are paid accurately and on time. Proper payroll management also helps businesses comply with tax laws, avoid legal penalties, and maintain employee satisfaction. Using a reliable business payroll system or Payroll Software can streamline this process and ensure error-free calculations.
Yes, most modern Payroll Software can handle both salaried and hourly employees. It allows businesses to customize calculations based on the type of employee, whether it's a fixed salary or an hourly wage. The software can also factor in overtime, bonuses, and other special payouts, ensuring accurate payroll calculations.
Payroll Software helps businesses stay compliant by automatically updating tax rates, applying appropriate deductions (like TDS, PF, and ESI), and generating statutory reports. This reduces the risk of errors and ensures that payroll calculations are in line with the latest regulations, saving businesses time and reducing the chances of penalties.